Journal: BMC Research Notes

Article Title: Hereditary hearing loss SNP-microarray pilot study

doi: 10.1186/s13104-018-3466-7

Figure Lengend Snippet: Overview of data files/data sets

Article Snippet: Data set 1 , Infinium HumanOmni1-Quad v1.0 SNP-microarray data , This dataset contains the raw intensity data files (Grn.idat and Red.idat) of each patient, as well as Matrix Signal Intensities (.txt) and Matrix Processed data (.txt) , NCBI Gene Expression Omnibus Data series accession: GSE111131 Data identifiers: GSM3022603 , GSM3022604 , GSM3022605 , GSM3022606 , GSM3022607 , GSM3022608 , GSM3022609 , GSM3022610 , GSM3022611 , GSM3022612 , GSM3022613 , GSM3022614 , GSM3022615 , GSM3022616 , GSM3022617 , GSM3022618 , GSM3022619 , GSM3022620 , GSM3022621 , GSM3022622 , GSM3022623 , GSM3022624 , GSM3022625 , GSM3022626 , GSM3022627 , GSM3022628 , GSM3022629 , GSM3022630 , GSM3022631 , GSM3022632 , GSM3022633 , GSM3022634 , GSM3022635 , GSM3022636 , GSM3022637 , GSM3022638 , GSM3022639 , GSM3022640 , GSM3022641 , GSM3022642 , GSM3022643 , GSM3022644 , GSM3022645 , GSM3022646 , GSM3022647 , GSM3022648 , GSM3022649 , GSM3022650 , GSM3022651 , GSM3022652 , GSM3022653 , GSM3022654 , GSM3022655 , GSM3022656 , GSM3022657 , GSM3022658 , GSM3022659 , GSM3022660 , GSM3022661 , GSM3022662 , GSM3022663 , GSM3022664 , GSM3022665 , GSM3022666 , GSM3022667 , GSM3022668 , GSM3022669 , GSM3022670 , GSM3022671 , GSM3022672 , GSM3022673 , GSM3022674 , GSM3022675 , GSM3022676 , GSM3022677 , GSM3022678 , GSM3022680 , GSM3022681 , GSM3022682 , GSM3022683 , GSM3022684 , GSM3022685 , GSM3022686 , GSM3022687 , GSM3022688 , GSM3022689 , GSM3022690 , GSM3022691 , GSM3022692 , GSM3022693 , GSM3022694 , GSM3022695 , GSM3022696 , GSM3022697 , GSM3022698 , GSM3022699 , GSM3022700 , GSM3022701 , GSM3022702 , GSM3022703 , GSM3022704 , GSM3022705 , GSM3022706 , GSM3022707 , GSM3022708 , GSM3022709 , GSM3022710 , GSM3022711 GSE111131 _Martix_signal_intensities.txt.gz GSE111131 _Matrix_Processed.txt.gz.

Techniques: Gene Expression

Journal: Ontario Health Technology Assessment Series

Article Title: Noninvasive Prenatal Testing for Trisomies 21, 18, and 13, Sex Chromosome Aneuploidies, and Microdeletions: A Health Technology Assessment

doi:

Figure Lengend Snippet: Ongoing Studies of Noninvasive Prenatal Testing

Article Snippet: GRADE Evidence Profile for Noninvasive Prenatal Testing Appendix 6: Ongoing Studies of Noninvasive Prenatal Testing Table A7: Registry ID Population Country Official Title Condition(s) Sponsor ClinicalTrials.gov {"type":"clinical-trial","attrs":{"text":"NCT02424474","term_id":"NCT02424474"}} NCT02424474 Average-risk France Fetal aneuploidies screening (21, 18, and 13) by cell-free fetal DNA analysis Trisomies 21, 18, 13 Assistance Publique—Hôpitaux de Paris Australian New Zealand Clinical Trials Registry ACTRN12617001587392 Average-risk Australia Prenatal screening for aneuploidy in the Australian public hospital system: a noninvasive prenatal screening test (NIPT) feasibility study Trisomies 21, 18, 13 Monosomy X Nepean Hospital ClinicalTrials.gov {"type":"clinical-trial","attrs":{"text":"NCT02787486","term_id":"NCT02787486"}} NCT02787486 Average-risk and high-risk United States A clinical study to evaluate the relative clinical sensitivity, specificity, and performance of a laboratory-developed test as a screening test for fetal chromosomal aneuploidy, infectious and other diseases, and RhD genotyping in the general population of pregnant people Trisomies 21, 18, 13 Sex chromosome aneuploidies Progenity, Inc. ClinicalTrials.gov {"type":"clinical-trial","attrs":{"text":"NCT03200041","term_id":"NCT03200041"}} NCT03200041 Average-risk and high-risk United Kingdom Clinical evaluation of the IONA test for noninvasive prenatal screening in twin pregnancies Trisomies 21, 18, 13 Premaitha Health Chinese Clinical Trial Registry ChiCTR-DDD-17013213 Average-risk and high-risk China The value of noninvasive prenatal testing in pregnancies of Hebei province: a prospective multi-center study Trisomies 21, 18, 13 Second Hospital of Hebei Medical University ClinicalTrials.gov {"type":"clinical-trial","attrs":{"text":"NCT02381457","term_id":"NCT02381457"}} NCT02381457 General pregnant population United States SNP-based microdeletion and aneuploidy registry Trisomies 21, 18, 13 Sex chromosome aneuploidies Microdeletion syndromes Natera, Inc. UMIN Clinical Trials Registry UMIN000023935 Pregnant people (risk not specified) Japan Analysis of state-trait anxiety in clients of noninvasive prenatal testing: an investigation to improve the quality of genetic counselling Not specified Niigata University Hospital Open in a separate window Abbreviation: RhD, rhesus D antigen; SNP, single nucleotide polymorphism.

Techniques:

Journal: Genes

Article Title: Development of a 76k Alpaca ( Vicugna pacos ) Single Nucleotide Polymorphisms (SNPs) Microarray

doi: 10.3390/genes12020291

Figure Lengend Snippet: Number of scaffold fragment lengths containing one SNP identified in this study and included in the microarray.

Article Snippet: Thirty (10 from Pasco and 20 from Puno) trios (sire, dam and progeny) were identified based on their pedigrees and were genotyped with the generated alpaca SNP microarray.

Techniques: Microarray

Journal: Genes

Article Title: Development of a 76k Alpaca ( Vicugna pacos ) Single Nucleotide Polymorphisms (SNPs) Microarray

doi: 10.3390/genes12020291

Figure Lengend Snippet: Number of SNPs selected for the microarray.

Article Snippet: Thirty (10 from Pasco and 20 from Puno) trios (sire, dam and progeny) were identified based on their pedigrees and were genotyped with the generated alpaca SNP microarray.

Techniques: Microarray

Journal: Genes

Article Title: Development of a 76k Alpaca ( Vicugna pacos ) Single Nucleotide Polymorphisms (SNPs) Microarray

doi: 10.3390/genes12020291

Figure Lengend Snippet: Coverage of the alpaca genome with SNPs included in the microarray.

Article Snippet: Thirty (10 from Pasco and 20 from Puno) trios (sire, dam and progeny) were identified based on their pedigrees and were genotyped with the generated alpaca SNP microarray.

Techniques: Microarray

Journal: Genes

Article Title: Development of a 76k Alpaca ( Vicugna pacos ) Single Nucleotide Polymorphisms (SNPs) Microarray

doi: 10.3390/genes12020291

Figure Lengend Snippet: Population structure based on microarray genotyping (Pacomarca—red, Quimsachata—green, Racco—blue and Gacocen—black).

Article Snippet: Thirty (10 from Pasco and 20 from Puno) trios (sire, dam and progeny) were identified based on their pedigrees and were genotyped with the generated alpaca SNP microarray.

Techniques: Microarray

Journal: Genes

Article Title: Development of a 76k Alpaca ( Vicugna pacos ) Single Nucleotide Polymorphisms (SNPs) Microarray

doi: 10.3390/genes12020291

Figure Lengend Snippet: Heat map of genomic relationships among animals based on microarray genotyping Gacocen (bottom left), Pacomarca and Quimsachata (center area) and Racco (top right).

Article Snippet: Thirty (10 from Pasco and 20 from Puno) trios (sire, dam and progeny) were identified based on their pedigrees and were genotyped with the generated alpaca SNP microarray.

Techniques: Microarray

Journal: Genes

Article Title: Development of a 76k Alpaca ( Vicugna pacos ) Single Nucleotide Polymorphisms (SNPs) Microarray

doi: 10.3390/genes12020291

Figure Lengend Snippet: Inbreeding coefficient (F) of alpacas genotyped by microarray.

Article Snippet: Thirty (10 from Pasco and 20 from Puno) trios (sire, dam and progeny) were identified based on their pedigrees and were genotyped with the generated alpaca SNP microarray.

Techniques: Microarray

Journal: Genes

Article Title: Development of a 76k Alpaca ( Vicugna pacos ) Single Nucleotide Polymorphisms (SNPs) Microarray

doi: 10.3390/genes12020291

Figure Lengend Snippet: Level of heterozygosity of alpacas genotyped by microarray.

Article Snippet: Thirty (10 from Pasco and 20 from Puno) trios (sire, dam and progeny) were identified based on their pedigrees and were genotyped with the generated alpaca SNP microarray.

Techniques: Microarray